| 1. | Disaster Management Cell |
| 2. | Blindness Control |
| 3. | Bureau of Planning |
| 4. | Cancer Control Programme |
| 5. | CCA |
| 6. | Central Design Bureau |
| 7. | CHS |
| 8. | Drugs Food Quality control division |
| 9. | Emergency Medical Relief |
| 10. | IC & IH |
| 11. | Immunization |
| 12. | INI -II Section |
| 13. | Medical Education |
| 14. | Medical Value Travel |
| 15. | Mental Health Division |
| 16. | National Programme For Prevention and Control of Cancer, Diabetes, Cardiovascular Disease and Stroke (NPCDCS) |
| 17. | National Programme for Health Care of the Elderly (NPHCE) |
| 18. | National Programme for Prevention and Control of Deafness (NPPCD) |
| 19. | National Center for Vector Borne Diseases Control (NCVBDC) |
| 20. | NGO Division |
| 21. | NHM Finance |
| 22. | NHM policy & Planning |
| 23. | NUHM |
| 24. | Infrastructure & HR Division |
| 25. | e-Health |
| 26. | Medical Education Policy - II |
| 27. | Dental |
| 28. | Nursing |
| 29. | PMSSY |
| 30. | PNDT |
| 31. | Principal Accounts Office |
| 32. | Training |
| 33. | Procurement |
| 34. | Revised National Tuberculosis Programme |
| 35. | Statistics Division |
| 36. | Training Division |
| 37. | Activities of Health and Family Welfare |
| 38. | OP & Nirodh Marketing |
| 39. | Drug De-Addiction Programme |
| 40. | Central Public Sector Enterprises |
| 41. | Drugs Regulation |